ADASTRA v1.6.10
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Soos
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adastra.autosome.org
rs12266014
chr10:24922362
C
>
T
Sequence
ggtatatatcagttaaactgatta[C/T]cgcattgatatggtttggctctgt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KAISO_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KAISO_HUMAN
1.75
-0.35
0.04
1.00
1.67
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
EMBL-EBI
granulocyte count
,
monocyte count
,
myeloid white cell count
,
neutrophil count
,
sum basophil neutrophil counts
,
sum neutrophil eosinophil counts
,
white blood cell count
GRASP
body mass index (bmi)
,
ldl cholesterol change with statins
,
obesity (body mass index (bmi))
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Cells_Cultured_fibroblasts
,
Testis
,
Thyroid
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)