rs12274420 chr11:26754058 A>G
- Sequence
gacaatgaaagcacggtctaagag[A/G]ccaccagatggcagcctcttcatg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte HEK293 (embryonic kidney) VCaP (prostate carcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.22 | 1.82 | 1.80 | n/a | n/a | |||
| SMC3_HUMAN | -0.31 | 1.98 | 1.92 | n/a | n/a | |||
| CTCF_HUMAN | 0.29 | 0.85 | 1.41 | 1.45 | Weak Concordant |
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Motif analysis
