rs1228367 chr11:75583193 C>A
- Sequence
tgaggactaacatcgcggcctttc[C/A]ccagaccagccaccggggactcca
- ASB in cell types
- K562 (myelogenous leukemia) pancreas gastroesophageal sphincter thoracic aorta
- ASB for transcription factors
- CTCF_HUMAN SPT5H_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.61 | 0.91 | 1.37 | n/a | No Hit | |||
| SPT5H_HUMAN | n/a | 2.29 | 2.00 | n/a | n/a | |||
| RING2_HUMAN | -2.16 | 2.36 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood