rs12291986 chr11:95789866 T>G
- Sequence
cgatggctcctcccaactcccaac[T/G]tccgcgacgcaggaagcgcccaca
- ASB in cell types
- GM12878 (female B-cells) Jurkat (T-cells) CD14+ monocytes periferal blood macrophages
- ASB for transcription factors
- ELF1_HUMAN MYB_HUMAN ZBT40_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 1.04 | 0.51 | 1.33 | -6.42 | Concordant | |||
| MYB_HUMAN | -0.69 | 1.59 | 1.53 | n/a | No Hit | |||
| ZBT40_HUMAN | 1.13 | -1.13 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.53 | -0.07 | 2.05 | n/a | No Hit | |||
| E2F1_HUMAN | 1.14 | 0.11 | 1.54 | -3.53 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood