rs1229393 chr1:167634726 G>A
- Sequence
ggcacatcatggcactgaaaaaaa[G/A]tcataaatttctaacttaggtgga
- ASB in cell types
- K562 (myelogenous leukemia) HEK293T (embryonic kidney) HEK293 (embryonic kidney) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.09 | -0.48 | 1.62 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.90 | 0.10 | 1.62 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP abnormal involuntary movement scale, chronic kidney disease, college completion, diabetic retinopathy in type 2 diabetes mellitus, late onset alzheimers disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Vagina, Whole_Blood