rs12329794 chr21:33380732 G>A
- Sequence
tctgactcacacaacaggatggca[G/A]aggcttggcaagacaggaagccaa
- ASB in cell types
- breast tumor tissue cranial neural crest cells
- ASB for transcription factors
- ESR1_HUMAN AP2A_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.22 | n/a | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 1.84 | n/a | 2.00 | n/a | No Hit | |||
| SRF_HUMAN | -2.17 | 1.93 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), suicide attempts in major depressive disorder
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Whole_Blood