rs12354554 chr10:38529232 G>T
- Sequence
gaatgtaatggaatggattggaat[G/T]gactagaaaggaattgaaaggaat
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- EP300_HUMAN CTCF_HUMAN MCM3_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | -0.22 | 1.88 | 2.23 | n/a | n/a | |||
| CTCF_HUMAN | -0.40 | 1.57 | 2.37 | n/a | No Hit | |||
| MCM3_HUMAN | n/a | 3.27 | 2.00 | n/a | n/a | |||
| ZFX_HUMAN | -1.28 | 1.68 | 2.79 | n/a | No Hit | |||
| HTF4_HUMAN | -0.07 | 2.28 | 1.96 | n/a | No Hit |
Items per page:
1 – 5 of 33
Motif analysis
