rs12361143 chr11:133064537 G>C
- Sequence
ggcgtcctcaggggccgctgcagg[G/C]ccaccttgtgtgcttgccctttcc
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) HepG2 (hepatoblastoma) heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN GABPA_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.57 | 0.47 | 1.40 | -3.53 | Concordant | |||
| GABPA_HUMAN | 1.28 | 0.62 | 1.64 | n/a | No Hit | |||
| GABP1_HUMAN | 1.48 | -1.74 | 1.33 | n/a | n/a |
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Motif analysis
