rs1236904 chr10:69508093 A>C
- Sequence
tcagtccactcaaaccttcgggcc[A/C]gaagacatgggatctagatttttt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) SK-N-SH (neuroblastoma) lymphoblastoid cells
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TYY1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.45 | 0.15 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | 1.66 | -0.56 | 1.35 | n/a | n/a | |||
| TYY1_HUMAN | 1.15 | -0.52 | 1.37 | n/a | No Hit | |||
| SMC3_HUMAN | 0.96 | -0.67 | 1.22 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Stomach, Testis, Thyroid