rs12402134 chr1:160109101 A>T
- Sequence
catgttctgtttattaagtcaccc[A/T]gagggcactcacattcctcaaggg
- ASB in cell types
- HEK293 (embryonic kidney) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma) hepatocytes
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.16 | 0.73 | 1.98 | |||
| VCaP (prostate carcinoma) | 2.23 | -3.00 | 2.00 | |||
| 22RV1 (prostate carcinoma) | 1.86 | -2.14 | 2.00 | |||
| hepatocytes | -1.21 | 1.28 | 1.17 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Ovary, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Whole_Blood