rs12403143 chr1:231046337 C>T
- Sequence
acacgacagggttttcacaatgct[C/T]ttccacacaatgtctggaatctat
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ bone marrow cell-derived erythroid progenitors
- ASB for transcription factors
- NCOR1_HUMAN TAL1_HUMAN HTF4_HUMAN TIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | 1.87 | n/a | 2.50 | n/a | n/a | |||
| TAL1_HUMAN | 3.40 | -1.81 | 2.25 | n/a | No Hit | |||
| HTF4_HUMAN | 1.51 | n/a | 2.50 | n/a | No Hit | |||
| TIF1A_HUMAN | 2.80 | n/a | 2.75 | n/a | n/a | |||
| NR2C1_HUMAN | 2.18 | n/a | 2.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia