rs12403427 chr1:11908513 C>T
- Sequence
accagtggtttttaaccccagcca[C/T]tgagtgatggagggttaccgactc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Th2-cells germinal center B-cells breast tumor tissue
- ASB for transcription factors
- MAF_HUMAN BCL6_HUMAN ESR1_HUMAN CHD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAF_HUMAN | 2.35 | -3.18 | 2.50 | n/a | No Hit | |||
| BCL6_HUMAN | 2.01 | -1.84 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.90 | -3.82 | 2.50 | n/a | No Hit | |||
| CHD1_HUMAN | n/a | 2.02 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Testis