rs12403717 chr1:40850195 A>C
- Sequence
ggtgtggtgctgccacctgccgag[A/C]aaagatgggtgttgcatcccatct
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) foreskin keratinocyte HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN ATF4_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 0.83 | 1.45 | 1.45 | Weak Concordant | |||
| KDM1A_HUMAN | -0.48 | 1.52 | 1.33 | n/a | n/a | |||
| ATF4_HUMAN | 1.54 | -1.26 | 1.00 | n/a | No Hit | |||
| SMC3_HUMAN | 0.83 | 1.14 | 1.56 | n/a | n/a |
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Motif analysis
