rs12405416 chr1:248779686 G>C
- Sequence
agagtcaagagccgaatcatatca[G/C]tagctaagtccatgggttgaggca
- ASB in cell types
- K562 (myelogenous leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | -0.42 | 0.93 | 2.53 |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, cystatin c in serum, parkinsons disease, personality disorders (pd) - cluster c, tardive dyskinesia
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid