rs12409704 chr1:16146498 C>T
- Sequence
tgcgaggatgtcatgtgggaggag[C/T]ctgctcgccccactgggctgcctc
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- HTF4_HUMAN MAZ_HUMAN HIC1_HUMAN PRDM1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 0.56 | 2.37 | 1.33 | n/a | No Hit | |||
| MAZ_HUMAN | 2.07 | 0.23 | 2.00 | n/a | No Hit | |||
| HIC1_HUMAN | 2.29 | n/a | 2.00 | n/a | No Hit | |||
| PRDM1_HUMAN | 2.30 | -3.26 | 2.00 | n/a | No Hit | |||
| ZN398_HUMAN | 2.25 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Thyroid