rs12410167 chr1:167553767 G>A
- Sequence
gcggtgtctccaggaagagtcccg[G/A]gccccaagacctgcagggacccag
- ASB in cell types
- K562 (myelogenous leukemia) fetal bone marrow-derived mononuclear cells breast tumor tissue
- ASB for transcription factors
- KMT2A_HUMAN RB_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 2.14 | -0.30 | 1.67 | n/a | n/a | |||
| RB_HUMAN | n/a | 2.96 | 2.50 | n/a | n/a | |||
| ESR1_HUMAN | 1.34 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Stomach, Testis