ADASTRA v1.6.10
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Soos
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adastra.autosome.org
rs12414470
chr10:29496525
C
>
T
Sequence
gcaaccggagaaatccatccgtgt[C/T]ctggccggtgccgggcaaaccccg
ASB in cell types
MM1.S (plasma cell myeloma)
Ishikawa (endometrial adenocarcinoma)
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
Search SNPs nearby
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View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.93
0.42
7.6·10
-4
1.00
1.47
n/a
No Hit
RAD21_HUMAN
1.54
-0.06
1.6·10
-3
0.93
1.33
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
college completion
,
years of education
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Cells_Cultured_fibroblasts
,
Lung
,
Muscle_Skeletal
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)