rs12415 chr2:231708582 T>C
- Sequence
attgttcctcatccgcctccttgc[T/C]cgccgcagccgcctccgccgcgcg
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) CD14+ monocytes thymus-derived CD34- cells
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN SMAD5_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.73 | -0.76 | 2.12 | n/a | No Hit | |||
| BCL3_HUMAN | 1.91 | -0.84 | 1.79 | n/a | n/a | |||
| SMAD5_HUMAN | 2.28 | -2.08 | 1.33 | n/a | n/a | |||
| PKNX1_HUMAN | 1.72 | -1.56 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.61 | 0.44 | 1.75 | n/a | No Hit |
Items per page:
1 – 5 of 8