rs12422771 chr12:6471107 G>T
- Sequence
tcctggtgcgcgcccagccctggt[G/T]ccctgctctggccctcgctccgca
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- ELF1_HUMAN ZBT11_HUMAN NRF1_HUMAN GLIS1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | n/a | 3.04 | 2.00 | n/a | No Hit | |||
| ZBT11_HUMAN | -3.29 | 2.38 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.17 | 1.45 | 1.50 | n/a | No Hit | |||
| GLIS1_HUMAN | -1.48 | 2.06 | 2.00 | n/a | n/a | |||
| ZN398_HUMAN | -1.97 | 2.04 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, cystatin c in serum, diastolic blood pressure (dbp), infant head circumference, systolic blood pressure (sbp), triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood