rs12426673 chr12:109052491 G>T
- Sequence
gaaaagaaagaaaggacgtggtcc[G/T]tcagctattgctctccgggggcag
- ASB in cell types
- K562 (myelogenous leukemia) upper lobe of left lung pancreas
- ASB for transcription factors
- GABPA_HUMAN ZBT11_HUMAN MNT_HUMAN MTA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -0.29 | 1.26 | 1.48 | n/a | No Hit | |||
| ZBT11_HUMAN | n/a | 2.64 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.18 | 1.99 | 2.00 | n/a | n/a | |||
| MTA2_HUMAN | -1.14 | 1.51 | 1.67 | n/a | n/a | |||
| KDM5B_HUMAN | 1.89 | 0.22 | 1.42 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood