rs12433877 chr14:92714834 G>T
- Sequence
aaatgacctcaacacaggcctgca[G/T]cctccccccctccaggcctcctgt
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) lymphoblastoid cells
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN ZN770_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -0.31 | 1.26 | 2.10 | n/a | n/a | |||
| RAD21_HUMAN | 0.09 | 0.94 | 1.94 | n/a | n/a | |||
| ZN770_HUMAN | 2.65 | n/a | 2.00 | -0.79 | Weak Concordant | |||
| CTCF_HUMAN | 0.74 | 0.64 | 1.52 | n/a | No Hit |
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Motif analysis
