rs12445769 chr16:56932874 A>G
- Sequence
acgtggctcttctcctccctggcc[A/G]ccttccgccgtgcccctccctgtc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SIN3A_HUMAN | n/a | 2.66 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic