rs12450573 chr17:76593630 A>G
- Sequence
ctcagaagtgaactgaattagagg[A/G]cacccagctggtgtccgctgcaga
- ASB in cell types
- RWPE2 foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.16 | 2.38 | 2.05 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.76 | -2.00 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid