rs12466496 chr2:101151653 T>C
- Sequence
cctccctcccgcctctccgcgctc[T/C]cagggggaactcgggagagctgcc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZBT40_HUMAN GABP1_HUMAN ZN341_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT40_HUMAN | 3.34 | n/a | 2.00 | n/a | n/a | |||
| GABP1_HUMAN | 3.70 | 0.91 | 2.00 | n/a | n/a | |||
| ZN341_HUMAN | 2.00 | -2.26 | 1.33 | 0.56 | Weak Discordant | |||
| IKZF1_HUMAN | 2.50 | -0.65 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.43 | n/a | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis