rs12474188 chr2:67733864 A>C
- Sequence
caccactccccatgcctggcatac[A/C]cacccaccccaatccagtcccagg
- ASB in cell types
- esophagus squamous epithelium IPSC-derived bipolar neuron pancreas PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.74 | -0.05 | 1.38 | n/a | No Hit | |||
| RAD21_HUMAN | 1.16 | -0.62 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), major depressive disorder (broad definition), major depressive disorder (broad definition) (females)