rs12477866 chr2:113078331 C>T
- Sequence
tgggtcctcagctcttctcagcca[C/T]cccctccctccccttctccctccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN REQU_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.30 | 0.83 | 1.50 | n/a | No Hit | |||
| REQU_HUMAN | 2.05 | n/a | 1.33 | n/a | n/a | |||
| FOXA1_HUMAN | 1.39 | n/a | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid