rs12483187 chr21:42734569 G>A
- Sequence
ctggctgattgactgaatgtcgtc[G/A]cttttctttttctttttttgagag
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- ATF7_HUMAN CREB1_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -3.17 | 2.78 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | n/a | 2.35 | 1.42 | 5.90 | Concordant | |||
| CEBPA_HUMAN | -1.92 | 1.70 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Colon_Transverse, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid