rs12487604 chr3:128618232 T>A
- Sequence
caacccccaggacaggaccaaccc[T/A]ctgcccccggctcaggccagagct
- ASB in cell types
- PANC1 (pancreatic ductal adenocarcinoma) HCT-116 (colon carcinoma) HEK293T (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| PANC1 (pancreatic ductal adenocarcinoma) | 1.67 | -1.92 | 1.33 | |||
| HCT-116 (colon carcinoma) | -0.68 | 1.39 | 1.17 | |||
| HEK293T (embryonic kidney) | -0.23 | 0.91 | 2.13 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood