rs12500824 chr4:76495474 A>G
- Sequence
cttcctgctccagagatctgatgc[A/G]atcaggctgagaacagacttcagc
- ASB in cell types
- liver
- ASB for transcription factors
- HNF4A_HUMAN RXRA_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 2.25 | -0.87 | 1.33 | n/a | No Hit | |||
| RXRA_HUMAN | 1.70 | -1.27 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 1.56 | -1.05 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, coronary artery disease (cad), cystatin c in serum, ldl cholesterol, microalbuminuria, serum creatinine, total cholesterol, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Testis, Thyroid, Uterus