rs125124 chr7:130899925 C>G
- Sequence
tccttctagcccctgtcccacccc[C/G]actccaaggtcgaagttcatttct
- ASB in cell types
- HepG2 (hepatoblastoma) liver GM12878 (female B-cells)
- ASB for transcription factors
- HNF4A_HUMAN RXRA_HUMAN IKZF1_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 1.10 | -0.40 | 1.33 | n/a | No Hit | |||
| RXRA_HUMAN | 1.71 | -0.31 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.89 | n/a | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 1.27 | -0.17 | 1.33 | -1.84 | Weak Concordant |
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Motif analysis
