rs12513181 chr4:122914501 C>A
- Sequence
agcaccactaaagcacaatttgag[C/A]gacctctgctggtcacaacataaa
- ASB in cell types
- foreskin keratinocyte bipolar neuron GM12878 (female B-cells) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN FOXA1_HUMAN ZBTB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.63 | -0.11 | 1.50 | -5.89 | Concordant | |||
| RAD21_HUMAN | 1.08 | -0.21 | 1.36 | n/a | n/a | |||
| FOXA1_HUMAN | 1.74 | -1.21 | 1.83 | n/a | No Hit | |||
| ZBTB2_HUMAN | 2.37 | -2.28 | 1.33 | n/a | n/a | |||
| TBX21_HUMAN | 1.57 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
