ADASTRA v1.6.10
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rs12520518
chr5:54489404
C
>
A
Sequence
catcaaataaagctgattaaccag[C/A]ttgatttgaaacttatttctactt
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
RAD21_HUMAN
CTCF_HUMAN
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Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
0.74
-0.20
0.01
0.97
1.93
n/a
n/a
CTCF_HUMAN
0.55
0.46
0.04
0.25
1.33
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
diabetic retinopathy in type 2 diabetes mellitus
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Colon_Sigmoid
,
Nerve_Tibial
,
Prostate
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)