rs12525576 chr6:49664961 G>A
- Sequence
gtaattgcatctttttttattcca[G/A]tgtacaagaactttctgttctccc
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma) prostate tumor
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.69 | 0.74 | 2.04 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.39 | -0.34 | 2.73 | n/a | No Hit | |||
| ERG_HUMAN | 1.33 | -3.61 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood