ADASTRA v1.6.10
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adastra.autosome.org
rs12529
chr10:5094459
C
>
G
Sequence
gtgacagggaatggattccaaaca[C/G]cagtgtgtaaagctaaatgatggc
ASB in cell types
K562 (myelogenous leukemia)
HepG2 (hepatoblastoma)
A549 (lung carcinoma)
liver
ASB for transcription factors
JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN
1.00
0.15
5.8·10
-3
0.97
2.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
2 hour glucose
,
college completion
,
ldl cholesterol change with statins
,
simpson-angus scale
,
total cholesterol change with statins
,
triglycerides
,
years of education
GTEx eQTL
Esophagus_Mucosa
,
Heart_Left_Ventricle
,
Liver
,
Nerve_Tibial
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)