rs12529984 chr6:70394764 G>T
- Sequence
cagaagcaggaagagagctggccg[G/T]aagatatgtaccctgtgaagaccg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- GABP1_HUMAN ZBT40_HUMAN E2F1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 1.15 | n/a | 2.00 | n/a | n/a | |||
| ZBT40_HUMAN | 3.01 | -0.50 | 2.25 | n/a | n/a | |||
| E2F1_HUMAN | 0.84 | -0.58 | 2.00 | -5.01 | Concordant | |||
| CREB1_HUMAN | 2.26 | -3.09 | 2.00 | n/a | No Hit | |||
| GABPA_HUMAN | 1.22 | n/a | 2.25 | -5.24 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid