rs12536646 chr7:133240020 C>T
- Sequence
ccaaggtagagcacattttctaca[C/T]gtttactccagccaaagaacccag
- ASB in cell types
- LNCaP (prostate carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.10 | 1.88 | 1.42 | 4.91 | Concordant | |||
| RING2_HUMAN | 1.71 | -1.96 | 1.50 | n/a | n/a |
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Motif analysis
