rs12540875 chr7:36153050 C>A
- Sequence
ccctcttgagccttgatgccgccc[C/A]ctcttccatggccccgcctctccc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes HEK293 (embryonic kidney)
- ASB for transcription factors
- NRF1_HUMAN STAT1_HUMAN SP2_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 0.89 | -0.77 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.51 | n/a | 2.50 | n/a | No Hit | |||
| SP2_HUMAN | 0.61 | 0.11 | 1.42 | -3.00 | Concordant | |||
| MNT_HUMAN | 1.34 | -0.60 | 2.12 | n/a | n/a | |||
| HDGF_HUMAN | 1.74 | -1.29 | 1.83 | n/a | n/a |
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Motif analysis
