rs12550009 chr8:15540311 C>T
- Sequence
cgcggcccgggtccctcgcaaagc[C/T]gctgccatcccggagggcccagcc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- IKZF1_HUMAN ZBT11_HUMAN HDAC1_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.55 | 1.91 | 2.00 | n/a | No Hit | |||
| ZBT11_HUMAN | -0.91 | 1.82 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.64 | 1.72 | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | -1.55 | 1.78 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Colon_Sigmoid, Esophagus_Muscularis, Liver, Ovary