rs12593724 chr15:80156134 T>C
- Sequence
tcccttttgcggtctgctaagtaa[T/C]gggtgccttcccaggcactggcgt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- HDAC1_HUMAN ZN592_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | 1.63 | -0.56 | 2.00 | n/a | n/a | |||
| ZN592_HUMAN | 2.30 | -3.18 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Stomach, Thyroid, Uterus