rs12593802 chr15:65318982 C>A
- Sequence
cagtagggatcaggcctctgttcc[C/A]gtggctgtaatccttgttaattcc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN ZN426_HUMAN ARI1B_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.06 | 0.34 | 1.42 | n/a | No Hit | |||
| ZN426_HUMAN | n/a | 2.02 | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.18 | -1.75 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.18 | 0.58 | 1.52 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood