rs12594789 chr15:65304862 G>A
- Sequence
cttacagatatcgtttaagttttc[G/A]gttctgcttgtaaacgcttcaatc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- PML_HUMAN SMAD5_HUMAN ZMIZ1_HUMAN TAF7_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PML_HUMAN | 2.06 | 0.65 | 1.83 | n/a | n/a | |||
| SMAD5_HUMAN | 1.82 | -1.46 | 1.67 | n/a | n/a | |||
| ZMIZ1_HUMAN | 2.37 | -3.41 | 2.00 | n/a | n/a | |||
| TAF7_HUMAN | 2.49 | -0.02 | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 1.94 | -0.97 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood