rs12597979 chr16:19396796 G>A
- Sequence
cgtatgaaagtttcccgaacaaag[G/A]tacatgggttaggtccttttgcaa
- ASB in cell types
- ZR-75-1 (invasive ductal carcinoma) LNCaP (prostate carcinoma) HCC70 (ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN STAT3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.20 | 1.26 | 1.70 | n/a | No Hit | |||
| STAT3_HUMAN | n/a | 2.39 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood