rs12599206 chr16:1556443 A>G
- Sequence
cctcatgccctgctggcatcggcc[A/G]aaaggagaaactgctgtgacgtgt
- ASB in cell types
- prostate gland LNCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| prostate gland | 1.98 | -1.93 | 1.00 | |||
| LNCaP (prostate carcinoma) | -0.16 | 0.74 | 1.31 |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, hdl cholesterol, ldl cholesterol, rheumatoid arthritis, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood