rs12603519 chr17:4555495 G>A
- Sequence
agttaaaagagcggcatttccgcc[G/A]tagctctgagcggaagtccctcgc
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes monocyte-derived macrophages
- ASB for transcription factors
- STAT1_HUMAN JUN_HUMAN GABPA_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.53 | n/a | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | 1.37 | -0.35 | 3.00 | n/a | No Hit | |||
| GABPA_HUMAN | 2.03 | -0.36 | 1.88 | -0.73 | Weak Concordant | |||
| BCL3_HUMAN | 1.35 | -0.58 | 3.00 | n/a | n/a | |||
| TF65_HUMAN | 2.06 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
