rs12607674 chr18:53380272 C>T
- Sequence
tagttccacattgctctccagtgg[C/T]acagtggtaaattacacccttctt
- ASB in cell types
- foreskin keratinocyte liver K562 (myelogenous leukemia) thyroid gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.91 | 2.02 | 1.63 | -0.66 | Weak Discordant | |||
| RAD21_HUMAN | 0.02 | 2.82 | 1.22 | n/a | n/a | |||
| NRF1_HUMAN | -2.04 | 2.08 | 1.28 | n/a | No Hit |
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Motif analysis
