rs12607903 chr18:3817134 C>T
- Sequence
ggtacagctgagggtcatagatga[C/T]gcacaccacacttgctatttctca
- ASB in cell types
- A549 (lung carcinoma) liver SUM159PT (pleiomorphic breast carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- JUN_HUMAN CEBPB_HUMAN JUND_HUMAN SP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.17 | 0.57 | 1.27 | -4.42 | Concordant | |||
| CEBPB_HUMAN | 1.12 | -0.51 | 1.33 | n/a | No Hit | |||
| JUND_HUMAN | 1.62 | -1.43 | 1.33 | -2.37 | Concordant | |||
| SP1_HUMAN | 1.67 | -0.15 | 1.33 | n/a | No Hit | |||
| GCR_HUMAN | 2.05 | -2.35 | 1.50 | n/a | No Hit |
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Motif analysis
