ADASTRA v1.6.10
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rs12610538
chr19:57280235
G
>
A
Sequence
ccctccgacttgtgcctatactaa[G/A]gcggtggccctaagacgacgcggg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
GM12878 (female B-cells)
A549 (lung carcinoma)
ASB for transcription factors
MTA2_HUMAN
ZN143_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTA2_HUMAN
3.10
n/a
2.5·10
-8
1.00
1.33
n/a
n/a
ZN143_HUMAN
-0.07
2.73
1.00
4.6·10
-5
2.96
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
maternal transmission distortion
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Colon_Sigmoid
,
Esophagus_Gastroesophageal_Junction
,
Heart_Atrial_Appendage
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)