rs12613605 chr2:43131771 G>T
- Sequence
ggcagtcttcgtgccagatgctat[G/T]gctgtccacagtggccctgcccct
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) breast tumor tissue CD14+ monocytes
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.19 | 0.98 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 0.34 | 0.95 | 1.17 | n/a | n/a | |||
| CTCF_HUMAN | 0.41 | 0.68 | 1.40 | n/a | No Hit | |||
| ESR1_HUMAN | 2.17 | n/a | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | 1.22 | -3.13 | 2.50 | n/a | No Hit |
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