rs12652980 chr5:173822689 T>G
- Sequence
gcagagttggggagggactagacg[T/G]tctcacgaaaaacaaagccacaag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN ARNT_HUMAN IKZF2_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.58 | 1.90 | 2.25 | n/a | No Hit | |||
| ARNT_HUMAN | 1.84 | 1.12 | 1.67 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.13 | -1.28 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | n/a | 1.82 | 1.83 | n/a | n/a | |||
| TBX21_HUMAN | 1.25 | -1.13 | 1.33 | n/a | No Hit |
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