rs12655784 chr5:173294108 T>C
- Sequence
aaaacgcgcggtgttctctctcca[T/C]ggccgccaggtggcgatgtggaat
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HeLa Kyoto (cervical adenocarcinoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN MNT_HUMAN RAD21_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.22 | 0.60 | 2.04 | -0.29 | Weak Concordant | |||
| MNT_HUMAN | 1.73 | -0.91 | 2.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.88 | 0.68 | 2.47 | n/a | n/a | |||
| KDM5B_HUMAN | 1.40 | -0.10 | 2.27 | n/a | n/a |
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Motif analysis
